How to use the visualization node

Retrieve the Slurm script

Go to your home directory:

cd

Copy this folder:

cp -R /workspace/visu .

This folder contains a visu.slurm script of which you must modify lines 34 and 35 to put the name of your Slurm account and the duration of use of the visualization node (cannot exceed 24 hours). For example, if your account is math and the reservation should last 2 hours:

#SBATCH --account=math
#SBATCH --time=02:00:00

Launch the job

Once visu.slurm has been modified, you can submit the job:

sbatch visu.slurm

This will create an output file into your visu folder. You can list the content of your folder using:

ll

Print the content of your output file. For instance:

cat visu-41489.out

Copy the line containing an ssh command. It comes after To setup the tunnel, run the following command from your desktop:. For example:

ssh -L 5901:visu01:5901 user9@134.XX.XX.XX

Open a session on the visualization node

Open a second terminal and paste the previous ssh command. A new session opens on Azzurra.

Open a VNC client, for example TightVNC. Your output file shows the Remote Host to define “After successful login you can access the VNC session at localhost:5901 on your desktop”. Type localhost:5901 as Remote Host:

Then, use the password at line 6 in your output file to log in.

Work on the visualization node

Once connected via VNC, a new window opens. Right click on the grey area and click on xterm to open a terminal:

To make sure that you use the Quadro RTX 6000 graphics card, precede the command to launch your software by vglrun. Example:

vglrun paraview

Software to be used on the visualization node

To be used only on the visualization node, without loading any module:

  • Gnuplot 4.6.2
  • Octave 3.8.2
  • evince (pdf viewer)
  • gthumb (png viewer)

Other visualization software available as modules:

If you need another software to be installed, please contact us.