Publications

Journals

  • Bandgap fluctuations and robustness intwo-dimensional hyperuniform dielectricmaterials. Luis Froufe, Geoffroy Aubry, Frank Scheffold, and Sofia Magkiriadou. https://doi.org/10.1364/OE.484232
  • Bayesian test of the mass of the graviton with planetary ephemerides. Vincenzo Mariani, Agnès Fienga, Olivier Minazzoli, Mickaël Gastineau, Jacques Laskar. Accepted for publication in Physical Review D. 21 pages. https://doi.org/10.48550/arXiv.2306.07069
  • Foiselle, M., S. Barbosa, O. Godin, C. L. Wu, W. Boukouaci, M. Andre, B. Aouizerate, F. Berna, C. Barau, D. Capdevielle, P. Vidailhet, I. Chereau, L. Davidovic, J. M. Dorey, C. Dubertret, J. Dubreucq, C. Faget, G. Fond, S. Leigner, P. M. Llorca, J. Mallet, D. Misdrahi, E. Martinuzzi, C. Passerieux, R. Rey, B. Pignon, M. Urbach, F. Schurhoff, N. Glaichenhaus, M. Leboyer, R. Tamouza and F.-S. Groups (2022). “Immuno-metabolic profile of patients with psychotic disorders and metabolic syndrome. Results from the FACE-SZ cohort.” Brain Behav Immun Health 22: 100436.
  • Barbosa, S., E. Martinuzzi, C. Gilet, L. Fillatre, O. Khalfallah, I. Sommer, S. Leucht, P. Dazzan, P. McGuire, C. Arango, C. M. Diaz-Caneja, W. Fleischhacker, D. Rujescu, B. Glenthoj, I. Winter, R. S. Kahn, R. Yolken, S. Lewis, R. Drake, L. Davidovic, M. Leboyer, N. Glaichenhaus and O. S. Group (2021). “Baseline Levels of C-Reactive Protein and Proinflammatory Cytokines Are Not Associated With Early Response to Amisulpride in Patients With First Episode Psychosis: The OPTiMiSE Cohort Study.” Schizophrenia Bulletin Open, 2021, 10.1093/schizbullopen/sgab017. hal-03286370
  • Mahmoud M R Elsawy, Anthony Gourdin, Mickael Binois, Régis Duvigneau, Didier Felbacq, et al. Multiobjective statistical learning optimization of RGB metalens. ACS photonics, 2021, 8 (8), pp.2498-2508. ⟨10.1021/acsphotonics.1c00753⟩. ⟨hal-03212349v2⟩
  • Mahmoud Elsawy, Mickael Binois, Régis Duvigneau, Stéphane Lanteri, Patrice Genevet. Optimization of metasurfaces under geometrical uncertainty using statistical learning. Optics Express, 2021, 29 (19), pp.29887. ⟨10.1364/OE.430409⟩. ⟨hal-03356986⟩
  • Pasquier, C., & Robichon, A. (2022). Evolutionary divergence of phosphorylation to regulate interactive protein networks in lower and higher species. International Journal of Molecular Sciences, 23(22), 14429. hal-03881865
  • Pasquier, C., Guerlais, V., Pallez, D., Rapetti-Mauss, R., & Soriani, O. (2023). A network embedding approach to identify active modules in biological interaction networks. Life Science Alliance, 6(9). hal-04135439
  • “First-Principles Analysis of CuMg2InS4: Insights into Optical, Piezoelectric, and Thermoelectric Properties”, Sadouki, O., Khelfaoui, F., Fontaine-Vive F. et al., J. Electron. Mater., 2023, 52, 6778–6790
  • “New phenylspirodrimanes from the Sponge-Associated Fungus Stachybotrys chartarum MUT 3308”, M. Dayras, F. Fontaine-Vive, M. Mehiri et al., Marine Drugs, 2023, 21(3), 135
  • Testing the mass of the graviton with Bayesian planetary numerical ephemerides B-INPOP. Vincenzo Mariani, A. Fienga, O. Minazzoli. Accepted by Astronomy & Astrophysics https://doi.org/10.48550/arXiv.2310.00719
  • Fanny Simões, Charles Bouveyron, Frédéric Precioso, DeepWILD: Wildlife Identification, Localisation and estimation on camera trap videos using Deep learning, Ecological Informatics, Volume 75, 2023, 102095, ISSN 1574-9541, https://doi.org/10.1016/j.ecoinf.2023.102095
  • Laure Martinelli, Camille Bihanic, Aurélie Bony, Florence Gros, Corentin Conart, Sébastien Fiorucci, Hervé Casabianca, Frédéric Schiets, Giorgiana Chietera, Benoît Boachon, Bernard Blerot, Sylvie Baudino, Frédéric Jullien, Denis Saint-Marcoux, Citronellol biosynthesis in pelargonium is a multistep pathway involving progesterone 5β-reductase and/or iridoid synthase-like enzymes, Plant Physiology, 2023;, kiad550, https://doi.org/10.1093/plphys/kiad550
  • Ligand Binding Properties of Odorant-Binding Protein OBP5 from Mus musculus. L. Moitrier, C. Belloir, M. Lalis, Y. Hou, J. Topin, L. Briand. Biology, 2022, 12(1), 2.
  • Extracellular loop 2 of G protein–coupled olfactory receptors is critical for odorant recognition. Y. Yu, Z. Ma, J. Pacalon, L. Xu, W. Li, C. Belloir, J. Topin, L. Briand, J. Golebiowski, X. Cong. Journal of Biological Chemistry, 2022, 298(9).
  • Exploring Dihydroflavonol-4-reductase reactivity and selectivity by QM/MM-MD simulations. J. Diharce, E. Bignon, S. Fiorucci, S. Antonczak, ChemBioChem, 2022, 23(3), e202100553.
  • Zhu Y, Semisalov B, Krstulovic G, et al. Direct and Inverse Cascades in Turbulent Bose-Einstein Condensates[J]. Physical Review Letters, 2023, 130(13): 133001. On the cover . https://link.aps.org/doi/10.1103/PhysRevLett.130.133001
  • Picardo JR, Plan ELCVM, Vincenzi D. Polymers in turbulence: stretching statistics and the role of extreme strain rate fluctuations. Journal of Fluid Mechanics. 2023;969:A24. doi:10.1017/jfm.2023.524
  • Wu, Y., Aghamiry, H. S., Operto, S., & Ma, J. (2023). Helmholtz-equation solution in nonsmooth media by a physics-informed neural network incorporating quadratic terms and a perfectly matching layer condition. Geophysics, 88(4), T185-T202.
  • Badia, A., D’Angelo, Y., Peters, F., & Lobry, L. (2022). Frame-invariant modeling for non-Brownian suspension flows. Journal of Non-Newtonian Fluid Mechanics, 309, 104904.
  • Rigolli, N., Magnoli, N., Rosasco, L., & Seminara, A. (2022). Learning to predict target location with turbulent odor plumes. Elife, 11, e72196. https://doi.org/10.7554/eLife.72196
  • Rigolli, N., Reddy, G., Seminara, A., & Vergassola, M. (2022). Alternation emerges as a multi-modal strategy for turbulent odor navigation. Elife, 11, e76989. https://doi.org/10.7554/eLife.76989
  • Zhu, Y., Semisalov, B., Krstulovic, G., & Nazarenko, S. (2022). Testing wave turbulence theory for the Gross-Pitaevskii system. Physical Review E, 106(1), 014205. https://doi.org/10.1103/PhysRevE.106.014205
  • Chlortetracycline, a Novel Arf Inhibitor That Decreases the Arf6-Dependent Invasive Properties of Breast Cancer Cells, E. Macia, M. Vazquez-Rojas, A. Robiolo, R. Fayad, S. Abélanet, I. Mus-Veteau, F. Fontaine-Vive, M. Mehiri,F. Luton, M. Franco, Molecules, 2021, 26(4), 969
  • Yazhgur, P., Aubry, G. J., Froufe-Pérez, L. S., & Scheffold, F. (2022). Scattering phase delay and momentum transfer of light in disordered media. Physical Review Research, 4(2), 023235. https://doi.org/10.1103/PhysRevResearch.4.023235
  • Nonoverlapping gene networks regulated by mating. Claude Pasquier, Alain Robichon. Life Science Alliance Nov 2021, 5 (2) e202101119; DOI: 10.26508/lsa.202101119
  • Paul M. Mannix, Yannick Ponty, and Florence Marcotte « Systematic Route to Subcritical Dynamo Branches » Phys. Rev. Lett. 129, 024502 – Published 5 July 2022 https://doi.org/10.1103/PhysRevLett.129.024502
  • Martinuzzi, E., S. Barbosa, P. Courtet, E. Olie, S. Guillaume, E. C. Ibrahim, D. Daoudlarian, L. Davidovic, N. Glaichenhaus and R. Belzeaux (2021). “Towards a blood test to differentiate bipolar disorder and major depressive disorder during a major depressive episode.” Brain Behav Immun Health, Mar10;13:100232; https://doi.org/10.1016/j.bbih.2021.100232
  • Barbosa, S., O. Khalfallah, A. Forhan, C. Galera, B. Heude, N. Glaichenhaus and L. Davidovic (2020). “Serum cytokines associated with behavior: A cross-sectional study in 5-year-old children. » Brain Behav Immun, Jul;87:377-387. https://doi.org/10.1016/j.bbi.2020.01.005  
  • Barbosa, S., O. Khalfallah, A. Forhan, C. Galera, B. Heude, N. Glaichenhaus and L. Davidovic (2020). “Immune activity at birth and later psychopathology in childhood.” Brain Behav Immun Health 8: 100141. https://doi.org/10.1016/j.bbih.2020.100141
  • Corentin Lothode, Jules Poncin, Didier Lemosse, David Gross, Eduardo Souza de Cursi, Investigation of blade-mast fluid-structure interaction of a tidal turbine, Ocean Engineering, Volume 261, 2022, 112046, ISSN 0029-8018, https://doi.org/10.1016/j.oceaneng.2022.112046   
  • Michel Orsi, Laurent Lobry, François Peters, Frame-invariant sub-grid corrections to the Fictitious Domain Method for the simulation of particulate suspensions in nonlinear flows using OpenFOAM, Journal of Computational Physics, Volume 474, 2023, 111823, ISSN 0021-9991, https://doi.org/10.1016/j.jcp.2022.111823
  • Davenel, V.; Puteaux, C.; Nisole, C.; Fontaine-Vive, F.; Fourquez, J.-M.; Michelet, V. « Indium-Catalyzed Cycloisomerization of 1,6-Cyclohexenylalkynes ». Catalysts 2021, 11, 546. https://doi.org/10.3390/catal11050546  
  • Topin, J., Bouysset, C., Pacalon, J. et al. Functional molecular switches of mammalian G protein-coupled bitter-taste receptors. Cell. Mol. Life Sci. 78, 7605–7615 (2021). https://doi.org/10.1007/s00018-021-03968-7 
  • Caballero-Vidal, G., Bouysset, C., Gévar, J. et al. Reverse chemical ecology in a moth: machine learning on odorant receptors identifies new behaviorally active agonists. Cell. Mol. Life Sci. 78, 6593–6603 (2021). https://doi.org/10.1007/s00018-021-03919-2 
  • Novel scaffold of natural compound eliciting sweet taste revealed by machine learning.
    C. Bouysset, C. Belloir, S. Antonczak, L. Briand, S. Fiorucci. Food Chem., 2020, 324, 126864.

Conferences

  • Fallacious Argument Classification in Political Debates. Pierpaolo Goffredo, Shohreh Haddadan, Vorakit Vorakitphan, Elena Cabrio, Serena Villata. Proceedings of the Thirty-First International Joint Conference on Artificial Intelligence Main Track. Pages 4143-4149. https://doi.org/10.24963/ijcai.2022/575
  • Testing the mass of the graviton with Bayesian planetary numerical ephemerides B-INPOP. Vincenzo Mariani, A. Fienga, O. Minazzoli. Rencontres de Moriond 2023 (GRAM).
  • Jourdon, A., May, D. A., and Gabriel, A. A.: Generalization of the Nitsche method to apply oblique boundary conditions in regional geodynamic models, EGU General Assembly 2023, Vienna, Austria, 24–28 Apr 2023, EGU23-14864, https://doi.org/10.5194/egusphere-egu23-14864, 2023.
  • Michel Orsi, Elisabeth Lemaire, Laurent Lobry, and François Peters. Simulation of pressure-driven flow of non-brownian suspensions : Local constitutive laws. In EuroMech Symposium- Suspension flows and rheology : inertia, shape and roughness matter, Nice, France, June 2023
  • Michel Orsi, Laurent Lobry, and François Peters NON-BROWNIAN SUSPENSIONS IN PRESSURE-DRIVENFLOW: NUMERICAL SIMULATIONS WITHFRAME-INVARIANT SUB-GRID CORRECTIONS. 8TH PACIFIC RIM CONFERENCE ON RHEOLOGY, May 15-19, 2023
  • M. Binois, R. Duvigneau, Mahmoud M. R. Elsawy, P. Genevet, S. Kadhir, et al. Advanced Numerical Modeling Methods for the Characterization and Optimization of Metasurfaces. AT-AP-RASC 2022 – 3rd URSI Atlantic and Asia Pacific Radio Science Meeting, May 2022, Gran Canaria, Spain. pp.1-4, ⟨10.23919/AT-AP-RASC54737.2022.9814395⟩. ⟨hal-03864889⟩
  • Mahmoud M R Elsawy, Mickaël Binois, Régis Duvigneau, Samira Khadir, Anthony Gourdin, et al. Multiobjective optimization for highly efficient and robust metasurface designs. OPTIQUE Nice 2022, Jul 2022, Nice, France. ⟨hal-03864836⟩
  • Mahmoud M. R. Elsawy, Christina Kyrou, Elena Mikheeva, Rémi Colom, Jean-Yves Duboz, et al. Universal active metasurface modulation with ultimate performance in reflection. Nanophotonics and Micro/Nano Optics International Conference 2022, Oct 2022, Paris, France. ⟨hal-03864856⟩
  • Bastien Buchwalter, Veronika Czellar and Engin Iyidogan. Multifractal Cryptocurrencies. Présenté aux conferences et séminaires suivants :
    • Fifth International Workshop in Financial Econometrics, Vila Angatu Eco Resort, Santo André (Brazil). Octobre 2023
    • Conference on Forecasting Financial Markets: ADVANCES FOR EXCHANGE RATES, INTEREST RATES AND ASSET MANAGEMENT, Rennes (France). Juin 2023
    • French Inter-Business School Conference and Forecasting Financial Markets Conference, Toulouse (France). Mars 2023
    • Finance Seminar, University of Luxembourg (Luxembourg). Janvier 2023
    • Finance Seminar, Rennes School of Business, Rennes (France). Janvier 2023
    • SKEMA Finance Seminar, Paris (France). Novembre 2022
    • ESSEC Asset Pricing Breakfast, Paris (France). Novembre 2022
  • Lombardi, R., Jozwiak, M., Dellamonica, J., & Pasquier, C. (2023, June). A machine learning approach to predict weaning outcome among ventilated patients in Intensive Care unit. In Reanimation 2023, the French Intensive Care Society International Congress (Vol. 13). hal-04160272
  • Clustering of heavy particles in Keplerian turbulence. Presented by Fabiola Gerosa at Geophysical and Astrophysical Fluid Dynamics 2023.
  • Clusters of heavy particles in two-dimensional Keplerian turbulence. Presented by Fabiola Gerosa at Particle Growth in Turbulence 2023 and EUROMECH COLLOQUIUM 628 Complex Particles in Turbulent Flow 2023.
  • Minimal seeds for subcritical dynamos. Complex Days, Nice, janvier 2023 : contribution orale de F. Marcotte
  • Matching receptor to odorant with protein language and graph neural networks. M. Hladiš, M. Lalis, S. Fiorucci, J. Topin. International Conference on Learning Representation (ICLR), 2023.
  • Une IA peut-elle apprendre à sentir ? S. Fiorucci. IADATES – “Intelligence Artificielle, Arômes et Parfum”, Grasse, 13 février 2023.
  • Ligand-based virtual screening of membrane proteins. S. Fiorucci Winterschool Biomembranes Pharmacology and Therapeutics, Nice, 15 décembre 2022.
  • Numerical models decipher odorant binding and receptor activation at the molecular level. M. Hladiš, J. Pacalon, M. Lalis, S. Fiorucci, J. Topin. Complex Day, Nice (France), February 2023.
  • Wu, Yanqi & Aghamiry, Hossein & Operto, Stéphane & Ma, Jianwei. (2023). Frequency-Domain Wave Simulation Using Physics-Informed Neural Networks (PINNs) with Free Surface Boundary Condition. 84th EAGE Annual Conference & Exhibition, Jun 2023, Volume 2023, p.1 – 5. https://doi.org/10.3997/2214-4609.202310403
  • E. Sopaci and J. P. Ampuero (2024), “Triggering of very shallow earthquakes by surface mass removal processes – case study of the 2019 Mw4.9 Le Teil, France earthquake”, European Geophysical Union General Assembly 2024
  • J. Premus and J. P. Ampuero (2024), “Dynamic earthquake source inversion with GAN priors, with application to the 2023 Mw 7.8 Kahramanmaras, Turkey earthquake”, European Geophysical Union General Assembly 2024
  • Cédric Vincent-Cuaz, Rémi Flamary, Marco Corneli, Titouan Vayer, and Nicolas Courty. Template based graph neural network with optimal transport distances. In Advances in Neural Information Processing Systems, 2022b. URL: https://openreview.net/forum?id=seYcx6CqPe
  • Djampa Kozlowski. Nerd : a tool to predict proteins involved in nematode plant parasitism. SophIA Summit 2022.
  • Djampa Kozlowski. Nerd : a tool to predict proteins involved in nematode plant parasitism. Journée Annotation de génomes, Intelligence Artificielle et Tex-Mining’ organisée par le PEPI IBIS (communauté d’ingénieurs INRAe) le 28/11/2022.
  • Gremmel, J., Duclaux, G., Corsini, M., Maillet, A., Jourdon, A., & Bascou, J. (2022). Structure, strain partitioning and exhumation mechanism during the late stage oblique tectonic evolution of the Variscan Tanneron massif (SE France) (No. EGU22-967). Copernicus Meetings.
  • Cerpa, N., Sigloch, K., Garel, F., Davies, R., and Heuret, A.: Subduction dynamics through the mantle transition zone in the presence of a weak asthenospheric layer, EGU General Assembly 2022, Vienna, Austria, 23–27 May 2022, EGU22-3822, https://doi.org/10.5194/egusphere-egu22-3822 , 2022.
  • Sahar Borzooei, Victorita Dolean, Claire Migliaccio and Pierre-Henri Tournier, « Solution of time-harmonic Maxwell’s equations by a domain decomposition method based on PML transmission conditions » – Poster at SCEE 2022, The 14th International Conference on Scientific Computing in Electrical Engineering
  • Sahar Borzooei. A domain decomposition method with PML transmission conditions for Maxwell’s equation. The 27th International Domain Decomposition Conference, DD27, in Prague, Czech Republic
  • Tests of GR with planetary ephemerides with BepiColombo simulations. Agnès Fienga (Géoazur, OCA), 56th Rencontres de Moriond « Gravitation », January 30th – February 6th 2022.https://moriond.in2p3.fr/2022/Gravitation/transparencies/02_tuesday/01_morning/04_fienga.pdf  
  • Faye, Antoine & Carrere, N & Sacher, Matthieu & Hauville, F & Nême, A. (2022). Determination of the equivalent structural properties of a composite hydrofoil. 25ème Congrès Français de Mécanique. Nantes, 20 août au 2 septembre 2022 https://www.researchgate.net/publication/363406203_Determination_of_the_equivalent_structural_properties_of_a_composite_hydrofoil
  • Identification systématique de branches dynamo sous-critiques. P.M. Mannix, Y. Ponty, F. Marcotte,  25ème Congrès Français de Mécanique, Nantes, 29 août-2 septembre 2022 – présentation orale (Paul Mannix)
  • Identification of subcritical dynamos and minimal seeds. Festival de Théorie d’Aix-en-Provence, Chaos Control, Feedback & Model Reduction, 4 juillet 2022 – séminaire invité (Florence Marcotte)
  • A systematic approach to identify subcritical dynamo instabilities. Courant Institute of Mathematical Sciences, New York University, Magneto-Fluid Dynamics Seminar, 7 décembre 2021 – séminaire invité (Florence Marcotte)
  • 55eme Congrès du Groupe Français de Rhéologie (26-28 octobre 2021, Bordeaux) M. Orsi, L. Lobry et F. Peters. Simulations de suspensions non-Browniennes concentrées : formulation d’une correction de lubrification invariante par changement de référentiel
  • Workshop organisé par le GDR MePhy à l’École de Physique des Houches (August 23-26, 2021, Les Houches) Michel Orsi, Laurent Lobry, François Peters. Simulation of particulate suspensions using OpenFOAM: frame-invariant sub-grid corrections to the Fictitious Domain Method
  • Young Rheologist Days 2020 (prévu en 2020, 6-9 juillet 2021, Giron) Michel Orsi, Laurent Lobry, Stany Gallier, François Peters. Rheology non-brownian dense suspensions: an optimised implementation of the fictitious domain method in OpenFOAM
  • 18th International Congress on Rheology (December 14-18, 2020, Rio de Janeiro) Michel Orsi, Laurent Lobry, Stany Gallier, François Peters. Rheology of non-Brownian concentrated suspensions: a parallel implementation of the Fictitious Domain Method in OpenFOAM
  • 14th World Congress in Computational Mechanics (WCCM) ECCOMAS Congress 2020 (19 – 24 July 2020, Paris) Ayoub BADIA, Laurent LOBRY, François PETERS and Yves D’ANGELO Frame invariant model for suspension flows
  • Modelling Culverts in Basilisk. Zied Amama, Nicolas Branco, Cheikh Mangara, Kevis Mbonyinshuti, Qiyu Yu, Thibaut Cottancin, Sarah Vigoureux, Pierre Brigode, Olivier Delestre and Pierre-Yves Lagrée. SimHydro 2021 6TH INTERNATIONAL CONFERENCE 16TH-18TH JUNE 2021 SOPHIA ANTIPOLIS – FRANCE
  • J. Topin, J. Golebiowski, Numerical modeling of odorant receptors activation dynamics. Pacific Chem, Honolulu, December 2021.
  • Binding site identification of the highly conserved insect odorant co-receptor (ORco)
    J. Pacalon, G. Audic, C. Moreau, J. Topin, J. Golebiowski. Réunion annuelle du GDR-O3, webinar, 25 novembre 2021.
  • Olfactory receptor ligand prediction via graph neural networks and representation learning
    M. Hladiš, S. Fiorucci, J. Golebiowski, J. Topin. SophIA summit 2021, Sophia Antipolis (France), 17-19 novembre 2021.
  • Representation learning to overcome scarce data in machine learning. Application to chemosensory receptors. M. Hladiš, S. Fiorucci, J. Golebiowski, J. Topin. 23e congrès du GGMM et 10e journées de la SFCi, Lille (France), 29 septembre – 1er novembre 2021.
  • Functional olfactomics in the crop pest Spodoptera littoralis (Lepidoptera, Noctuidae)
    E. Jacquin-Joly, G. Caballero-Vidal, C. Bouysset, A. de Fouchier, C. Song, G. Wang, J. Golebiowski, S. Fiorucci, N. Montagné. Intl conf of insect science, Baoding (China), 2-6 juillet 2021.
  • Numerical models contribute to expand the sweet taste chemical space.
    C. Bouysset, C. Belloir, S. Antonczak, L. Briand, S. Fiorucci. 16th Weurman Flavour Research Symposium, webinar, 3-7 mai 2021.
  • Molecular bases of chemoreception in a crop pest moth.
    E. Jacquin-Joly, N. Montagné, G. Caballero-Vidal, B.H. Lucie, A. de Fouchier, W. Walker, T. Chertemps, F. Koutroumpa, G. Wang, S. Cao, C. Bouysset, J. Golebiowski, S. Fiorucci. Entomological Society of America ESA2020, webinar, 11 novembre 2020.
  • J. Topin, C.A. de March, J. Golebiowski, Numerical modeling of odorant receptors activation dynamics. Numerical modeling of odorant receptors activation dynamics, International Symposium of Olfactory and Taste, Portland (USA), August 2020.

Workshops and other oral presentations

  • Pierpaolo Goffredo, Elena Cabrio, Serena Villata, Shohreh Haddadan and Jhonatan Torres Sanchez. DISPUTool 2.0: A Modular Architecture for Multi-Layer Argumentative Analysis of Political Debates. AAAI 2023 Demo paper
  • Olfactory stimulation for the treatment of apathy in neurodegenerative disorders. J. Topin, R. David. Annual Meeting of the NeuroMod Institute, Antibes (France), June 2022.
  • Université de Newcastle, octobre 2023 : séminaire de F. Marcotte
  • From genes to perception: decoding chemical senses by numerical and molecular modeling approaches. S. Fiorucci, Chimie de la matière complexe (UMR7140 CNRS) Strasbourg, 9 mars 2023.
  • Café art/science regards scientifiques : la transmission de savoir-faire olfactifs. Le Hublot Nice, Décembre 2022.
  • Forum scientifique – Café rencontre : L’IA au service de la création parfum, mythe ou réalité ? Musée International de la Parfumerie Grasse, Octobre 2022.
  • Yanqi Wu, Hossein S. Aghamiry, Stephane Operto, Jianwei Ma. Wave simulation in non-smooth media by PINN with quadratic neural network and PML condition. Workshop Artificial Intelligence for Waves – AI4W 2022. https://wavecomplexity.univ-cotedazur.fr/events/ai4w2022/contribs/yanqi_wu/
  • 4th BepiColombo GGWG Virtual Meeting (21st January 2022) : Agnes Fienga, « INPOP Planetary Ephemerides and BepiColombo : from Orbit Improvements to GR and Alternative Theories tests » https://www.cosmos.esa.int/web/bepicolombo-ggwg
  • Easy paths to subcritical dynamo branches. Isaac Newton Institute for Mathematical Sciences, University of Leeds, Fluid flow and magnetic field generation in fluids and plasmas – theory and laboratory experiments, 17 octobre 2022 – présentation orale (Yannick Ponty)
  • Minimal seeds for subcritical dynamos. Isaac Newton Institute for Mathematical Sciences, University of Cambridge, Dynamos in planets and stars: similarities and differences, 14 septembre 2022 – séminaire invité (Florence Marcotte)

PhD Thesis

  • Dynamique de particules allongées dans des écoulements tourbillonnaires et turbulence élastique dans les solutions de polymères. Sumithra Reddy YERASI, Laboratoire Jean Alexandre Dieudonné, Université Côte d’Azur. Soutenue le 2 mai 2023.
  • Thèse de Megan Clampitt : Indexation de l’état de santé des coraux par une approche basée sur l’intelligence artificielle. Soutenue le 04-09-2023 à l’Université Côte d’Azur , dans le cadre de l’École doctorale Sciences de la vie et de la santé.
  • Thèse de Mattis Reisner : Études expérimentales de la multifractalité et des transitions de phase topologiques dans des réseaux de résonateurs micro-ondes. Soutenue le 01-03-2023 à l’Université Côte d’Azur, dans le cadre de l’École doctorale Sciences fondamentales et appliquées.
  • Compétition entre la solvatation et l’agrégation ionique dans des systèmes ioniques-solvant: influence sur les propriétés de transport. Dmytro DUDARIEV. 2023. Université de Lille (dans le cadre de l’action de solidarité UniCA – Université de Kharkiv).
  • Simulation de suspensions non-Browniennes concentrées frictionnelles et adhésives en écoulement linéaire et non-linéaire par Michel Orsi. Soutenue le 2 décembre 2022. https://theses.fr/s317644
  • Navigation olfactive : comment prendre des décisions avec un signal brisé par Nicola Rigolli. Soutenue le 19 mai 2022. https://theses.fr/2022COAZ4023
  • Modélisation moléculaire des récepteurs chimiosensoriels par Jody Pacalon. Soutenue en novembre 2022 https://theses.fr/s317702
  • Cédric Bouysset « Molecular basis of chemosensory perception », 2021. Institut de Chimie de Nice.
  • Dynamique et statistiques de particules allongées et flexibles dans des écoulements turbulents, Sofia Allende, 2021 https://www.theses.fr/2021COAZ4005 Centre de mise en forme de matériaux – MINES ParisTech.
  • Ayoub Badia, « Modélisation numérique de suspensions non-browniennes concentrées en écoulement rhéométrique ou général » 2021. Encadrants : Yves D’Angelo (LJAD), François PETERS (INPHYNI) et Laurent LOBRY (INPHYNI).

Posters

  • Using bulk RNA-seq and iClip-seq analysis to investigate mRNA localization in synapses and uncover the role of the IMP protein. Hiba Laghrissi, Lauren Blot, Martina Halleger, Jernej Ule, Arnaud Hubstenberger & Florence Besse. POSTER JOBIM 2023 – Nice (FRANCE)
  • New insights on planetesimal formation in turbulent disks. Fabiola Antonietta Gerosa, Héloïse Meheut, Jérémie Bec. The inner disk of young stars (SPIDI 2023)
  • “Theoretical study of the vibrational spectra of Naphtalene and its cation with the VMFCI method”, (NanoSpace Joint Scientific Meeting, Ljubljana, 9-11/02/2023, Slovénie).
  • Comparisons between tidal deformation modeling from the semi-analytical ALMA3 and the finite element CitcomSVE. Agnes Fienga, Observatoire de la Côte d’Azur, Géoazur, Valbonne, France, Arthur Briaud, CNRS, Observatoire de la Cote d’azur, Geoazur, Valbonne, France, Shijie Zhong, University of Colorado at Boulder, Department of Physics, Boulder, CO, United States and Anthony Mémin, Université Côte d’Azur, CNRS, OCA, IRD, Géoazur, Nice, France. AGU 2023.
  • Tidal deformations and internal structure: sensitivity to rheologies. Agnes Fienga, Observatoire de la Côte d’Azur, Géoazur, Valbonne, France, Alex Guinard, Géoazur – Université Nice Sophia Antipolis, Valbonne, France, Anthony Mémin, Université Côte d’Azur, CNRS, OCA, IRD, Géoazur, Nice, France, Arthur Briaud, CNRS, Observatoire de la Cote d’azur, Geoazur, Valbonne, France and Clément Ganino, Université Côte d’Azur, OCA, CNRS, Géoazur, Valbonne, France. AGU 2023.
  • Recognizing emotions triggered by fragrances using virtual reality and physiological measurement. X. Meleqi, U Meierhenrich, A. Pegard, J. Topin. ECRO 2022, Berlin (Allemagne), 31 août-3 septembre 2022.
  • Deciphering the ligand binding properties of the mouse odorant-binding protein OBP5 from Mus musculus. L. Moitrier, C. Belloir, M. Lalis, Y. Hou, J. Topin, L. Briand. ECRO 2022, Berlin (Allemagne), 31 août-3 septembre 2022.
  • Bayesian planetary numerical ephemerides B-INPOP with MCMC. Vincenzo Mariani. Poster pour Bayesian deep learning for cosmology and time-domain astrophysics 2022 (20/06 – 24/06 2022).
  • Imaging High-Frequency Radiation of Large Earthquakes with a Bayesian Inversion Method. Carolina Paz Gutiérrez Morales. Poster pour the IV Assembly of the Latin American and Caribbean Seismological Commission, Quito, Ecuador, Oct. 2022.
  • Predicting the combinatorial code via graph neural networks and representation learning M. Hladiš, S. Fiorucci, J. Topin, AChemS XLIV, Bonita Springs (USA), 20-23 avril 2022.
  • Integrative structural modeling reveals functional molecular switches of human G protein-coupled bitter-taste receptors J. Topin, C. Bouysset, Y. Kim, M. Rhyu, J. Golebiowski, S. Fiorucci. AChemS XLIV, Bonita Springs (USA), 20-23 avril 2022.
  • Structure-based virtual screening of bitter taste receptors M. Lalis, C. Belloir, J. Topin, L. Briand, S. Fiorucci. ERNEST 6, webinaire, 28-31 mars 2022.
  • Graines minimales de transition dynamo. 25e Rencontre du Non-Linéaire, Université Paris Cité, 29 – 31 mars 2022, P. M. Mannix, Y. Ponty, Florence Marcotte, présenté par Florence Marcotte.
  • Advances in geophysical and astrophysical turbulence TURW05, Isaac Newton Institute, University of Cambridge, 16-20 mai 2022, présenté par Paul Mannix.
  • 25th International Congress of Theoretical and Applied Mechanics (ICTAM) 2020+1 (prévu en 2020, tenu en 2021, Milan) Michel Orsi, Laurent Lobry, Stany Gallier, François Peters. Rheology non-brownian dense suspensions: an optimised implementation of the fictitious domain method in OpenFOAM
  • Insect odorant co-receptor ORco agonists binding mechanism. J. Pacalon, G. Audic, C. Moreau, J. Topin, J. Golebiowski. 23e congrès du GGMM et 10e journées de la SFCi, Lille (France), 29 septembre – 1er novembre 2021.
  • Integrative structural modeling reveals functional molecular switches of human G protein-coupled bitter-taste receptors.
  • C. Bouysset, J. Topin, Y. Kim, J. Pacalon, M. Rhyu, S. Fiorucci, J. Golebiowski. 23e congrès du GGMM et 10e journées de la SFCi, Lille (France), 29 septembre – 1er novembre 2021.
  • Odor prediction via graph neural networks and representation learning. M. Hladiš, S. Fiorucci, J. Golebiowski, J. Topin, ECRO 2021, Cascais (Portugal), 13-16 septembre 2021.
  • Functional molecular switches of mammalian G protein-coupled bitter-taste receptors
    C. Bouysset, J. Topin, Y. Kim, J. Pacalon, M. Rhyu, S. Fiorucci, J. Golebiowski. ECRO 2021, Cascais (Portugal), 13-16 septembre 2021.
  • Binding site identification of the highly conserved insect odorant co-receptor (ORco)
    J. Pacalon, G. Audic, C. Moreau, J. Topin, J. Golebiowski. ECRO 2021, Cascais (Portugal), 13-16 septembre 2021.
    Bitter-Taste Receptors: From Sequence to Structure. C. Bouysset, J. Topin, S. Antonczak, M. Rhyu, J. Golebiowski, S. Fiorucci.  International Symposium on Olfaction and Taste (ISOT 2020), webinaire, 3-7 aout 2020.

Internships and student projects

  • Carolina Paz Gutiérrez Morales. Inversión bayesiana en altas frecuencias de la distribución de deslizamiento del terremoto de Tocopilla 2007, Mw 7.7. Rapport de master « Magíster en Ciencias, Mención Geofísica », Universidad de Chile (2022). https://repositorio.uchile.cl/handle/2250/187604
  • Romain Lombardi. Prédiction du succès du test de sevrage ventilatoire en service de réanimation par Machine Learning. Rapport de stage Master 2 Sciences du Vivant Parcours Biologie, informatique et mathématiques (BIM). Université Côte d’Azur 2023
  • Rapport de stage de Sonya Joyce Ines NDOMKEU TCHATO « Construction d’une base de données et segmentation automatique d’avant-bras par Deep Learning: premières étapes de la planification préopératoire. » Polytech Grenoble, 2023.
  • Mame Seynabou Fall. Développement d’un outil pour l’analyse des données multi-omiques afin d’améliorer la compréhension de la pathophysiologie du syndrome de l’X fragile. Rapport de stage Master 2 Sciences du Vivant Parcours Biologie, informatique et mathématiques (BIM). Université Côte d’Azur 2023
  • Ercan Seçkin. Origine, histoire évolutive et prédiction des gènes orphelins dans les génomes de nématodes de ravageurs de culture. Rapport de stage Master 2 Sciences du Vivant Parcours Biologie, informatique et mathématiques (BIM). Université Côte d’Azur 2023
  • Maxime Multari. Finding signatures associated to the mechanism of pathogen resistance bypass by network inference using multi-omics data integration. Rapport de stage Master 2 Sciences du Vivant Parcours Biologie, informatique et mathématiques (BIM). Université Côte d’Azur 2023
  • Youssef Boulaimen. VIOLA: a novel strategy for Variant prIOritization using LAtent space in the context of mitochondrial diseases. Rapport de stage Master 2 Sciences du Vivant Parcours Biologie, informatique et mathématiques (BIM). Université Côte d’Azur 2023
  • Rapport de stage de Anjana Bhat. MSc2 in Data Science and AI. Université Côte d’Azur 2023
  • Rapport de stage de Madina Bekbergenova. Université Côte d’Azur 2023
  • Minh Nhat Do, Marco Milanesio. Image Classification on Corals using ensemble deep Transfer-learning approach. Rapport de stage Master 2 Data science & Artificial intelligence (2022).
  • Towards the identification of sequences involved in alternative splicing caused by the loss of LncRNA SNHG21 par Anna Diamant, 2022, stage de Master 2 SV (Sciences du Vivant) Biology, Informatics and Mathematics (UCA)
  • Association entre cytokines à la naissance et troubles émotionnels chez l’enfant à 5 ans : réplication et validation. Stage de Benjamin Lapijover à l’IPMC en 2022 (étudiant Master 2 SV BIM à UCA).
  • Expanding the chemical space of bitter taste receptors by structure-based virtual screening. Maxence Lalis. 2021. Stage à l’ICN (UCA) encadré par Sébastien Fiorucci. Master’s degree Biomathematics, Bioinformatics, and Computational Biology – Université de Paris (2021)
  • BlobNet A Convolutional Neural Network to detect particles on images. David Paulovics. Stage à l’INPHYNI encadré par Frédéric Blanc. Master 1 Ondes, Atomes, Matière, Université Côte d’Azur (2020) http://master-oam.unice.fr/stages/2019-2020-M1-posters/David.pdf
  • Theoretical study of naphtalene neutral and cation vibrational spectra with the VMFCI method. Clélia Bastelica, stage au LJAD encadré par Patrick Cassam-Chenaï. M1 Ondes Atomes Matière (UCA 2021) http://master-oam.unice.fr/stages/2020-2021-M1-posters/Clelia.pdf
  • El Hassan Afddas, rapport de M2 Chimie Théorique et Modélisation (Université de Montpellier). Stage au LJAD encadré par Patrick Cassam-Chenaï.
  • Zied Amama, stage de GE4 (Polytech) encadré par Pierre Brigode (Géoazur) et Olivier Delestre (LJAD). 2020
  • Mickaël Lastes, stage de GE4 (Polytech) encadré par Pierre Brigode (Géoazur) et Olivier Delestre (LJAD). 2020
  • Master thesis report – Johannes Nickel « Characterisation of the 2020 Flood Impacts within the Bieugne Catchment through 2D-Modelling with TELEMAC » M. Sc. Hydroinformatics and Water Management (Polytech), 2021.
  • Master thesis report Yan Joron « Modélisation hydro-sédimentaire des impacts de la tempête Alex sur les bassins de la Vésubie et de la Roya » – M. Sc. Hydroinformatics and Water Management (Polytech), 2021 https://msi.univ-cotedazur.fr/modelisation-hydro-sedimentaire-des-impacts-de-la-tempete-alex-sur-les-bassins-de-la-vesubie-et-de-la-roya
  • Rapport PFE Génie de l’eau 5ème année Polytech « Restauration efficiente et durable du tronçon du Lac des Gaves » – étudiants E. Fernandez, A. Matard, A. Moutinho, E. Sautel, Y. Sofyane.
  • Haute résolution pour la simulation du vent par descente d’échelle. Évaluation du modèle SDM-WindPoS, pour une utilisation dans le domaine des sports nautiques par Thomas Ponthieu – Master 2 Météorologie, Océanographie, Climat (Sorbonne Université, 2021). EPC CALISTO (INRIA)