{"id":545,"date":"2020-05-13T10:26:42","date_gmt":"2020-05-13T08:26:42","guid":{"rendered":"http:\/\/calculs.univ-cotedazur.fr\/?page_id=545"},"modified":"2026-03-18T15:54:52","modified_gmt":"2026-03-18T14:54:52","slug":"list-of-modules-and-software","status":"publish","type":"page","link":"https:\/\/calculs.univ-cotedazur.fr\/?page_id=545&lang=en","title":{"rendered":"List of modules and software"},"content":{"rendered":"\n<p>This page lists the modules installed on the cluster. Some job examples and detailed information are available for some modules by clicking on their name.  <\/p>\n\n\n\n<p>If you already have access to Azzurra, it is recommended that you use the command <em>module spider<\/em> to display the list of modules. <\/p>\n\n\n\n<p>If you need to understand how to use modules, please <a href=\"https:\/\/calculs.univ-cotedazur.fr\/?page_id=535&amp;lang=en\">click here.<\/a><\/p>\n\n\n\n<figure class=\"wp-block-table is-style-stripes\"><table><tbody><tr><td>Software<\/td><td>Version(s)<\/td><td>URL<\/td><\/tr><tr><td><a href=\"https:\/\/calculs.univ-cotedazur.fr\/?page_id=2004\" data-type=\"page\" data-id=\"2004\">amber<\/a><\/td><td>24 (serial, mpi, cuda, cuda mpi)<\/td><td><a href=\"https:\/\/ambermd.org\/\" target=\"_blank\" rel=\"noreferrer noopener\" aria-label=\"https:\/\/ambermd.org\/ (s\u2019ouvre dans un nouvel onglet)\">https:\/\/ambermd.org\/<\/a> <\/td><\/tr><tr><td>aocc<\/td><td>5.0.0<\/td><td><a href=\"https:\/\/www.amd.com\/fr\/developer\/aocc.html\" target=\"_blank\" rel=\"noreferrer noopener\">https:\/\/www.amd.com\/fr\/developer\/aocc.html<\/a><\/td><\/tr><tr><td>apptainer<\/td><td>1.4.0<\/td><td><a href=\"https:\/\/apptainer.org\/\" target=\"_blank\" rel=\"noreferrer noopener\">https:\/\/apptainer.org\/<\/a><\/td><\/tr><tr><td>autodock<\/td><td>4.2.6<\/td><td><a href=\"https:\/\/autodock.scripps.edu\" target=\"_blank\" rel=\"noreferrer noopener\">https:\/\/autodock.scripps.edu<\/a><\/td><\/tr><tr><td>autodock-vina<\/td><td>1.1.2<\/td><td><a href=\"http:\/\/vina.scripps.edu\/\" target=\"_blank\" rel=\"noreferrer noopener\" aria-label=\"http:\/\/vina.scripps.edu\/ (s\u2019ouvre dans un nouvel onglet)\">http:\/\/vina.scripps.edu\/<\/a><\/td><\/tr><tr><td>autotools<\/td><td><\/td><td><\/td><\/tr><tr><td>bcftools<\/td><td>1.22<\/td><td><a href=\"http:\/\/www.htslib.org\/\" target=\"_blank\" rel=\"noreferrer noopener\">http:\/\/www.htslib.org\/<\/a><\/td><\/tr><tr><td>blas<\/td><td>3.8.0<\/td><td> <a href=\"http:\/\/www.netlib.org\/blas\/\" target=\"_blank\" rel=\"noreferrer noopener\" aria-label=\" (s\u2019ouvre dans un nouvel onglet)\">http:\/\/www.netlib.org\/blas\/<\/a> <\/td><\/tr><tr><td>cellranger<\/td><td>10.0.0<\/td><td><a rel=\"noreferrer noopener\" href=\"https:\/\/www.10xgenomics.com\/support\/software\/cell-ranger\/downloads\" target=\"_blank\">CellRanger website<\/a><\/td><\/tr><tr><td>cmake<\/td><td>3.17.3, 3.24.2, 3.31.6<\/td><td><a href=\"https:\/\/cmake.org\/\" target=\"_blank\" rel=\"noreferrer noopener\" aria-label=\"https:\/\/cmake.org\/ (s\u2019ouvre dans un nouvel onglet)\">https:\/\/cmake.org\/<\/a><\/td><\/tr><tr><td>cuda<\/td><td>11.8, 12.0, 12.3, 12.4, 12.5, 12.8, 13.0<\/td><td><a href=\"https:\/\/developer.nvidia.com\/cuda-zone\" target=\"_blank\" rel=\"noreferrer noopener\" aria-label=\"https:\/\/developer.nvidia.com\/cuda-zone (s\u2019ouvre dans un nouvel onglet)\">https:\/\/developer.nvidia.com\/cuda-zone<\/a><\/td><\/tr><tr><td>ffmpeg<\/td><td>7.1.1<\/td><td><a href=\"https:\/\/www.ffmpeg.org\/\" target=\"_blank\" rel=\"noreferrer noopener\" aria-label=\"https:\/\/www.ffmpeg.org\/  (s\u2019ouvre dans un nouvel onglet)\">https:\/\/www.ffmpeg.org\/ <\/a><\/td><\/tr><tr><td>fftw<\/td><td>3.3.10<\/td><td><a href=\"http:\/\/www.fftw.org\/\" target=\"_blank\" rel=\"noreferrer noopener\">http:\/\/www.fftw.org\/<\/a><\/td><\/tr><tr><td><a href=\"https:\/\/calculs.univ-cotedazur.fr\/?page_id=818\">gaussian<\/a>*<\/td><td>16<\/td><td><a href=\"https:\/\/gaussian.com\/\" target=\"_blank\" rel=\"noreferrer noopener\" aria-label=\"https:\/\/gaussian.com\/ (s\u2019ouvre dans un nouvel onglet)\">https:\/\/gaussian.com\/<\/a><\/td><\/tr><tr><td>gaussview<\/td><td>6.1.1<\/td><td><a href=\"https:\/\/gaussian.com\/gaussview6\/\" target=\"_blank\" rel=\"noreferrer noopener\">https:\/\/gaussian.com\/gaussview6\/<\/a><\/td><\/tr><tr><td>gnu<\/td><td>12.2.0, 13.2.0, 14.2.0, 15.1.0<\/td><td><a href=\"https:\/\/gcc.gnu.org\/\" target=\"_blank\" rel=\"noreferrer noopener\" aria-label=\"https:\/\/gcc.gnu.org\/ (s\u2019ouvre dans un nouvel onglet)\">https:\/\/gcc.gnu.org\/<\/a><\/td><\/tr><tr><td>gromacs<\/td><td>2025.1<\/td><td><a href=\"http:\/\/www.gromacs.org\/\" target=\"_blank\" rel=\"noreferrer noopener\" aria-label=\"http:\/\/www.gromacs.org\/ (s\u2019ouvre dans un nouvel onglet)\">http:\/\/www.gromacs.org\/<\/a><\/td><\/tr><tr><td>gsl<\/td><td>2.8<\/td><td><a rel=\"noreferrer noopener\" href=\"https:\/\/www.gnu.org\/software\/gsl\/\" target=\"_blank\">https:\/\/www.gnu.org\/software\/gsl\/<\/a><\/td><\/tr><tr><td>hdf5<\/td><td>1.14.0, 1.14.6<\/td><td><a href=\"https:\/\/www.hdfgroup.org\/solutions\/hdf5\/\" target=\"_blank\" rel=\"noreferrer noopener\" aria-label=\"https:\/\/www.hdfgroup.org\/solutions\/hdf5\/ (s\u2019ouvre dans un nouvel onglet)\">https:\/\/www.hdfgroup.org\/solutions\/hdf5\/<\/a><\/td><\/tr><tr><td>intel<\/td><td>2020-cluster-xe, 2025<\/td><td><a href=\"https:\/\/software.intel.com\/content\/www\/us\/en\/develop\/tools\/oneapi\/commercial-base-hpc.html\" target=\"_blank\" rel=\"noreferrer noopener\" aria-label=\"Site web Intel (s\u2019ouvre dans un nouvel onglet)\">Site web Intel<\/a><\/td><\/tr><tr><td><a href=\"https:\/\/calculs.univ-cotedazur.fr\/?page_id=2604\" data-type=\"page\" data-id=\"2604\">julia<\/a>*<\/td><td>1.9.0, 1.12.2<\/td><td><a rel=\"noreferrer noopener\" href=\"https:\/\/julialang.org\/\" target=\"_blank\">https:\/\/julialang.org\/<\/a><\/td><\/tr><tr><td>lammps<\/td><td>29Aug2024<\/td><td><a href=\"https:\/\/www.lammps.org\/\" target=\"_blank\" rel=\"noreferrer noopener\">https:\/\/www.lammps.org\/<\/a><\/td><\/tr><tr><td>lapack<\/td><td>3.10.0<\/td><td><a rel=\"noreferrer noopener\" aria-label=\" (s\u2019ouvre dans un nouvel onglet)\" href=\"http:\/\/www.netlib.org\/lapack\/\" target=\"_blank\">http:\/\/www.netlib.org\/lapack\/<\/a> <\/td><\/tr><tr><td>libconfig<\/td><td>1.8<\/td><td><a href=\"https:\/\/hyperrealm.github.io\/libconfig\/\" target=\"_blank\" rel=\"noreferrer noopener\">https:\/\/hyperrealm.github.io\/libconfig\/<\/a><\/td><\/tr><tr><td><a href=\"https:\/\/calculs.univ-cotedazur.fr\/?page_id=364\">miniconda<\/a><\/td><td>25.1.1<\/td><td><a href=\"https:\/\/docs.conda.io\/en\/latest\/miniconda.html\" target=\"_blank\" rel=\"noreferrer noopener\" aria-label=\" (s\u2019ouvre dans un nouvel onglet)\">https:\/\/docs.conda.io\/en\/latest\/miniconda.html<\/a> <\/td><\/tr><tr><td>mpich<\/td><td>3.4.3 (ofi, ucx)<\/td><td><a href=\"https:\/\/www.mpich.org\/\" target=\"_blank\" rel=\"noreferrer noopener\">https:\/\/www.mpich.org\/<\/a><\/td><\/tr><tr><td>mumps<\/td><td>5.8.1<\/td><td><a href=\"https:\/\/mumps-solver.org\/\" target=\"_blank\" rel=\"noreferrer noopener\">https:\/\/mumps-solver.org\/<\/a><\/td><\/tr><tr><td>netcdf<\/td><td>4.9.2<\/td><td><a href=\"https:\/\/www.unidata.ucar.edu\/software\/netcdf\/\" target=\"_blank\" rel=\"noreferrer noopener\" aria-label=\"https:\/\/www.unidata.ucar.edu\/software\/netcdf\/ (s\u2019ouvre dans un nouvel onglet)\">https:\/\/www.unidata.ucar.edu\/software\/netcdf\/<\/a><\/td><\/tr><tr><td>ninja<\/td><td>1.12.2<\/td><td><a href=\"https:\/\/ninja-build.org\/\" target=\"_blank\" rel=\"noreferrer noopener\">https:\/\/ninja-build.org\/<\/a><\/td><\/tr><tr><td>nvhpc<\/td><td>25.1<\/td><td><a href=\"https:\/\/developer.nvidia.com\/hpc-sdk\" target=\"_blank\" rel=\"noreferrer noopener\">https:\/\/developer.nvidia.com\/hpc-sdk<\/a><\/td><\/tr><tr><td>openblas<\/td><td>0.3.29, 0.3.30<\/td><td><a href=\"https:\/\/www.openblas.net\/\" target=\"_blank\" rel=\"noreferrer noopener\" aria-label=\"https:\/\/www.openblas.net\/ (s\u2019ouvre dans un nouvel onglet)\">https:\/\/www.openblas.net\/<\/a><\/td><\/tr><tr><td>OpenFOAM.com<\/td><td>2206, 2412, 2506<\/td><td><a href=\"https:\/\/www.openfoam.com\/\" target=\"_blank\" rel=\"noreferrer noopener\" aria-label=\"https:\/\/www.openfoam.com\/ (s\u2019ouvre dans un nouvel onglet)\">https:\/\/www.openfoam.com\/<\/a><\/td><\/tr><tr><td><a href=\"https:\/\/calculs.univ-cotedazur.fr\/?page_id=367\">openmpi<\/a><\/td><td>4.1.5, 4.1.7, 5.0.7, 5.0.8<\/td><td><a href=\"https:\/\/www.open-mpi.org\/\" target=\"_blank\" rel=\"noreferrer noopener\" aria-label=\"https:\/\/www.open-mpi.org\/ (s\u2019ouvre dans un nouvel onglet)\">https:\/\/www.open-mpi.org\/<\/a><\/td><\/tr><tr><td>orca<\/td><td>6.1.1<\/td><td><\/td><\/tr><tr><td>paraview<\/td><td>5.13.3, 6.0.1<\/td><td><a href=\"https:\/\/www.paraview.org\/\" target=\"_blank\" rel=\"noreferrer noopener\">https:\/\/www.paraview.org\/<\/a><\/td><\/tr><tr><td>pmix<\/td><td>4.2.9<\/td><td><a href=\"https:\/\/pmix.org\/\" target=\"_blank\" rel=\"noreferrer noopener\" aria-label=\"https:\/\/pmix.org\/ (s\u2019ouvre dans un nouvel onglet)\">https:\/\/pmix.org\/<\/a><\/td><\/tr><tr><td>pnetcdf<\/td><td>1.14.0<\/td><td><a href=\"https:\/\/parallel-netcdf.github.io\/\" target=\"_blank\" rel=\"noreferrer noopener\" aria-label=\"https:\/\/parallel-netcdf.github.io\/ (s\u2019ouvre dans un nouvel onglet)\">https:\/\/parallel-netcdf.github.io\/<\/a><\/td><\/tr><tr><td><a href=\"https:\/\/calculs.univ-cotedazur.fr\/?page_id=3056&amp;lang=en\">povray<\/a>*<\/td><td>3.6.1, 3.8.0<\/td><td><a href=\"http:\/\/www.povray.org\" target=\"_blank\" rel=\"noreferrer noopener\">http:\/\/www.povray.org<\/a><\/td><\/tr><tr><td>prun<\/td><td>2.2<\/td><td><\/td><\/tr><tr><td>python<\/td><td>3.8.1, 3.13.2<\/td><td><a href=\"http:\/\/www.python.org\/\" target=\"_blank\" rel=\"noreferrer noopener\" aria-label=\"http:\/\/www.python.org\/ (s\u2019ouvre dans un nouvel onglet)\">http:\/\/www.python.org\/<\/a><\/td><\/tr><tr><td>scalapack<\/td><td>2.2.2<\/td><td><a href=\"http:\/\/www.netlib.org\/scalapack\/\" target=\"_blank\" rel=\"noreferrer noopener\" aria-label=\"http:\/\/www.netlib.org\/scalapack\/ (s\u2019ouvre dans un nouvel onglet)\">http:\/\/www.netlib.org\/scalapack\/<\/a><\/td><\/tr><tr><td>singularity-ce<\/td><td>4.3.0<\/td><td><a href=\"https:\/\/sylabs.io\/singularity\/\" target=\"_blank\" rel=\"noreferrer noopener\">https:\/\/sylabs.io\/singularity\/<\/a><\/td><\/tr><tr><td>superlu<\/td><td>6.4.0, 7.0.0<\/td><td><a href=\"https:\/\/portal.nersc.gov\/project\/sparse\/superlu\/\" target=\"_blank\" rel=\"noreferrer noopener\">https:\/\/portal.nersc.gov\/project\/sparse\/superlu\/<\/a><\/td><\/tr><tr><td><a href=\"https:\/\/calculs.univ-cotedazur.fr\/?page_id=805\">Telemac<\/a><\/td><td>v8p4r0<\/td><td><a href=\"http:\/\/opentelemac.org\" target=\"_blank\" rel=\"noreferrer noopener\" aria-label=\"http:\/\/opentelemac.org  (s\u2019ouvre dans un nouvel onglet)\">http:\/\/opentelemac.org <\/a><\/td><\/tr><tr><td>travis<\/td><td>220729<\/td><td><a href=\"http:\/\/www.travis-analyzer.de\/\" target=\"_blank\" rel=\"noreferrer noopener\">http:\/\/www.travis-analyzer.de\/<\/a><\/td><\/tr><tr><td>VASP<\/td><td>5.4.4<\/td><td><a href=\"https:\/\/www.vasp.at\/\" target=\"_blank\" rel=\"noreferrer noopener\" aria-label=\"https:\/\/www.vasp.at\/ (s\u2019ouvre dans un nouvel onglet)\">https:\/\/www.vasp.at\/<\/a><\/td><\/tr><tr><td>VMD<\/td><td>2.0.0<\/td><td><a href=\"https:\/\/www.ks.uiuc.edu\/Research\/vmd\/\" target=\"_blank\" rel=\"noreferrer noopener\">https:\/\/www.ks.uiuc.edu\/Research\/vmd\/<\/a><\/td><\/tr><\/tbody><\/table><\/figure>\n\n\n\n<p>*Only works on Intel processors. You need to add the Slurm option \u00ab\u00a0constraint=intel\u00a0\u00bb. Click on the corresponding module name for more information.<\/p>\n","protected":false},"excerpt":{"rendered":"<p>This page lists the modules installed on the cluster. Some job examples and detailed information are available for some modules by clicking on their name. If you already have access to Azzurra, it is recommended that you use the command &hellip; <\/p>\n","protected":false},"author":1,"featured_media":0,"parent":538,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":[],"_links":{"self":[{"href":"https:\/\/calculs.univ-cotedazur.fr\/index.php?rest_route=\/wp\/v2\/pages\/545"}],"collection":[{"href":"https:\/\/calculs.univ-cotedazur.fr\/index.php?rest_route=\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/calculs.univ-cotedazur.fr\/index.php?rest_route=\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/calculs.univ-cotedazur.fr\/index.php?rest_route=\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/calculs.univ-cotedazur.fr\/index.php?rest_route=%2Fwp%2Fv2%2Fcomments&post=545"}],"version-history":[{"count":77,"href":"https:\/\/calculs.univ-cotedazur.fr\/index.php?rest_route=\/wp\/v2\/pages\/545\/revisions"}],"predecessor-version":[{"id":3319,"href":"https:\/\/calculs.univ-cotedazur.fr\/index.php?rest_route=\/wp\/v2\/pages\/545\/revisions\/3319"}],"up":[{"embeddable":true,"href":"https:\/\/calculs.univ-cotedazur.fr\/index.php?rest_route=\/wp\/v2\/pages\/538"}],"wp:attachment":[{"href":"https:\/\/calculs.univ-cotedazur.fr\/index.php?rest_route=%2Fwp%2Fv2%2Fmedia&parent=545"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}