This page lists the modules installed on the cluster. Some job examples and detailed information are available for some modules by clicking on their name.
If you already have access to Azzurra, it is recommended that you use the command module spider to display the list of modules.
If you need to understand how to use modules, please click here.
Software Version(s) URL amber 18, 20 (serial, mpi, cuda, cuda mpi) https://ambermd.org/ autodock 4.2.6 https://autodock.scripps.edu autodock-vina 1.1.2 http://vina.scripps.edu/ autotools basilisk http://basilisk.fr/ bcftools 1.3.1 http://www.htslib.org/ blas 3.8.0 http://www.netlib.org/blas/ clustershell 1.8.2 cmake 3.15, 3.17.3, 3.20.1, 3.30.3 https://cmake.org/ cuda 9.0, 9.2, 10.2, 11.0, 11.4, 12.2 https://developer.nvidia.com/cuda-zone dorado 0.5.3 https://github.com/nanoporetech/dorado ffmpeg 4.2 https://www.ffmpeg.org/ fftw 2.1.5, 3.3.8, 3.3.9, 3.3.10 http://www.fftw.org/ fluidity https://fluidityproject.github.io/ freefem 4.9 https://freefem.org/ gatk 4.1.5.0 https://gatk.broadinstitute.org/ gaussian 16 https://gaussian.com/ gaussview 6.1.1 https://gaussian.com/gaussview6/ gcc 4.8.5, 4.9.2, 9.3.0, 11.3.0, 12.2.0, 14.2.0 https://gcc.gnu.org/ gemini 0.30.2 https://gemini.readthedocs.io gmp 5.0.1 https://gmplib.org/ gnu 5.4.0, 7.3.0, 8.3.0 https://gcc.gnu.org/ gromacs 2022, 2021.4, 2021, 2018.8 with plumed 2.5 http://www.gromacs.org/ gsl 2.6 https://www.gnu.org/software/gsl/ guile 3.0.7 https://www.gnu.org/software/guile/ hdf5 1.8.14, 1.10.5, 1.12.1, 1.14.0 https://www.hdfgroup.org/solutions/hdf5/ instagraal 0.1.2 https://github.com/koszullab/instagraal intel 2020-cluster-xe Intel website intel-runtime 2019 julia 1.9.0 https://julialang.org/ kmer-ssr https://github.com/ridgelab/Kmer-SSR lapack 3.9.0 http://www.netlib.org/lapack/ miniconda 3 https://docs.conda.io/en/latest/miniconda.html mpc 0.8.1 mpfr 2.4.2 https://www.mpfr.org/ mpich 3.3.1 https://www.mpich.org/ mvapich 2.3.2, 2.3.3 https://mvapich.cse.ohio-state.edu/ netcdf 4.7.1 https://www.unidata.ucar.edu/software/netcdf/ netcdf-cxx 4.3.1 https://www.unidata.ucar.edu/software/netcdf/ numeca 7.2.1 NumPy 1.15.3 https://numpy.org/ openbabel 2.4.1 http://openbabel.org/ openblas 0.3.7 https://www.openblas.net/ OpenFOAM.com 1912, 2006, 2206 https://www.openfoam.com/ OpenFOAM.org 5.0 https://www.openfoam.org openmpi 4.1.2, 4.1.4rc1 https://www.open-mpi.org/ paraview 5.10.1 https://www.paraview.org/ PETSc 3.16.2 https://petsc.org plumed 2.5, 2.6 ht tps://www.plumed.org/ pmix 2.2.2 https://pmix.org/ pnetcdf 1.12 https://parallel-netcdf.github.io/ povray 3.8 http://www.povray.org prun 1.3 Python 3.6.5, 3.7.7, 3.8.1, 3.9.6, 3.10.4 http://www.python.org/ R 3.6.1, 4.2.0 https://www.r-project.org/ RStudio 2022.02.2 https://rstudio.com/ samtools 1.3.1 http://www.htslib.org/ scalapack 2.0.2 http://www.netlib.org/scalapack/ scipy 1.2.1 https://www.scipy.org/ strelka 2.9.10 https://github.com/Illumina/strel ka Telemac v8p4r0 http://opentelemac.org travis http://www.travis-analyzer.de/ VarSCAN 2.3.9 http://varscan.sourceforge.net/ VASP 5.4.4 https://www.vasp.at/ VEP 99.2 https://www.ensembl.org/vep VMD 1.9.4 https://www.ks.uiuc.edu/Research/vmd/
