List of modules and software

This page lists the modules installed on the cluster. Some job examples and detailed information are available for some modules by clicking on their name.

If you already have access to Azzurra, it is recommended that you use the command module spider to display the list of modules.

If you need to understand how to use modules, please click here.

SoftwareVersion(s)URL
amber18 (serial, mpi, cuda, cuda mpi)https://ambermd.org/
autodock-vina1.1.2http://vina.scripps.edu/
autotools
basilisk http://basilisk.fr/
bcftools1.3.1 http://www.htslib.org/
blas3.8.0 http://www.netlib.org/blas/
clustershell 1.8.2
cmake3.17.3https://cmake.org/
cuda9.2, 10.2https://developer.nvidia.com/cuda-zone
ffmpeg4.2https://www.ffmpeg.org/
gatk4.1.5.0https://gatk.broadinstitute.org/
gaussian16https://gaussian.com/
gcc4.8.5, 4.9.2, 9.3.0 https://gcc.gnu.org/
gemini0.30.2https://gemini.readthedocs.io
gnu5.4.0, 7.3.0, 8.3.0https://gcc.gnu.org/
gromacs2018.8 mpi with plumed 2.5http://www.gromacs.org/
gsl2.6https://www.gnu.org/software/gsl/
hdf51.10.5https://www.hdfgroup.org/solutions/hdf5/
instagraal0.1.2https://github.com/koszullab/instagraal
intel2020-cluster-xeIntel website
intel-runtime2019
lapack3.9.0http://www.netlib.org/lapack/
miniconda3https://docs.conda.io/en/latest/miniconda.html
mpich3.3.1https://www.mpich.org/
mvapich2.3.2, 2.3.3https://mvapich.cse.ohio-state.edu/
netcdf4.7.1https://www.unidata.ucar.edu/software/netcdf/
netcdf-cxx4.3.1https://www.unidata.ucar.edu/software/netcdf/
numeca7.2.1
NumPy1.15.3https://numpy.org/
openbabel2.4.1http://openbabel.org/
openblas0.3.7https://www.openblas.net/
OpenFOAM.com1912, 2006https://www.openfoam.com/
OpenFOAM.org5.0https://www.openfoam.org
openmpi4.0.3https://www.open-mpi.org/
plumed2.5, 2.6 https://www.plumed.org/
pmix2.2.2https://pmix.org/
pnetcdf1.12https://parallel-netcdf.github.io/
prun1.3
Python3.8.1http://www.python.org/
R3.6.1https://www.r-project.org/
samtools1.3.1http://www.htslib.org/
scalapack2.0.2http://www.netlib.org/scalapack/
scipy1.2.1https://www.scipy.org/
strelka2.9.10https://github.com/Illumina/strelka
Telemactrunkhttp://opentelemac.org
VarSCAN2.3.9http://varscan.sourceforge.net/
VASP5.4.4https://www.vasp.at/
VEP99.2https://www.ensembl.org/vep